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This just in: We are 99.5% gorilla …

Well, we must be. From “What Have We Got in Common With a Gorilla? Insight Into Human Evolution from Gorilla Genome Sequence” (ScienceDaily, Mar. 7, 2012), we learn,

Researchers have just completed the genome sequence for the gorilla — the last genus of the living great apes to have its genome decoded. While confirming that our closest relative is the chimpanzee, the team show that much of the human genome more closely resembles the gorilla than it does the chimpanzee genome.

Before we were 99% chimpanzee, so … Hey, wait a minute … Don’t sign anything

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46 Responses to This just in: We are 99.5% gorilla …

  1. Hmm, seems they inadvertently left a few notes out of the article:

    First, it has now been revealed that chimps are not nearly as identical in their DNA sequences to humans as was once thought (and still widely believed);

    Chimp chromosome creates puzzles – 2004
    Excerpt: However, the researchers were in for a surprise. Because chimps and humans appear broadly similar, some have assumed that most of the differences would occur in the large regions of DNA that do not appear to have any obvious function. But that was not the case. The researchers report in ‘Nature’ that many of the differences were within genes, the regions of DNA that code for proteins. 83% of the 231 genes compared had differences that affected the amino acid sequence of the protein they encoded. And 20% showed “significant structural changes”. In addition, there were nearly 68,000 regions that were either extra or missing between the two sequences, accounting for around 5% of the chromosome.,,, “we have seen a much higher percentage of change than people speculated.” The researchers also carried out some experiments to look at when and how strongly the genes are switched on. 20% of the genes showed significant differences in their pattern of activity.
    http://www.nature.com/news/199.....524-8.html

    Study Reports a Whopping “23% of Our Genome” Contradicts Standard Human-Ape Evolutionary Phylogeny – Casey Luskin – June 2011
    Excerpt: For about 23% of our genome, we share no immediate genetic ancestry with our closest living relative, the chimpanzee. This encompasses genes and exons to the same extent as intergenic regions. We conclude that about 1/3 of our genes started to evolve as human-specific lineages before the differentiation of human, chimps, and gorillas took place. (of note; 1/3 of our genes is equal to about 7000 genes that we do not share with chimpanzees)
    http://www.evolutionnews.org/2.....47041.html

    moreover, what was once thought to be 98.8% identical gene sequences similarity, for protein coding portion of the genome, is now found to be only 86%-89% identical.

    Genome-Wide DNA Alignment Similarity (Identity) for 40,000 Chimpanzee DNA Sequences Queried against the Human Genome is 86–89% – Jeffrey P. Tomkins – December 28, 2011
    Concluding statement: Depending on the BLASTN parameter combination, average sequence identity for the thirty separate experiments between human and chimp varied between 86 and 89%. The average chimp query sequence length was 740 bases and depending on the BLASTN parameter combination, average alignment length varied between 121 and 191 bases.
    Excluding data for the number of clones that did not align or the large amount of bases within clones that did not align, an unbiased conservative estimate of genome-wide human-chimp DNA similarity is not more than 86–89% identical. The conservative nature of these estimates is further noted by the fact that the 40,000 sequence chimp sequences that were tested, represent pre-selected homologous sequence already known to align to the human genome.
    http://www.answersingenesis.or.....n1/blastin

    Chimp and human Y chromosomes evolving faster than expected – Jan. 2010
    Excerpt: “The results overturned the expectation that the chimp and human Y chromosomes would be highly similar. Instead, they differ remarkably in their structure and gene content.,,, The chimp Y, for example, has lost one third to one half of the human Y chromosome genes.
    http://www.physorg.com/news182605704.html

    Second, neo-Darwinists simply have not ‘scientifically’ demonstrated their mechanism for their materialistic conjecture:

    Waiting Longer for Two Mutations – Michael J. Behe
    Excerpt: Citing malaria literature sources (White 2004) I had noted that the de novo appearance of chloroquine resistance in Plasmodium falciparum was an event of probability of 1 in 10^20. I then wrote that ‘for humans to achieve a mutation like this by chance, we would have to wait 100 million times 10 million years’ (1 quadrillion years)(Behe 2007) (because that is the extrapolated time that it would take to produce 10^20 humans). Durrett and Schmidt (2008, p. 1507) retort that my number ‘is 5 million times larger than the calculation we have just given’ using their model (which nonetheless “using their model” gives a prohibitively long waiting time of 216 million years). Their criticism compares apples to oranges. My figure of 10^20 is an empirical statistic from the literature; it is not, as their calculation is, a theoretical estimate from a population genetics model.
    http://www.discovery.org/a/9461

    Experimental Evolution in Fruit Flies (35 years of trying to force fruit flies to evolve in the laboratory fails, spectacularly) – October 2010
    Excerpt: “Despite decades of sustained selection in relatively small, sexually reproducing laboratory populations, selection did not lead to the fixation of newly arising unconditionally advantageous alleles.,,, “This research really upends the dominant paradigm about how species evolve,” said ecology and evolutionary biology professor Anthony Long, the primary investigator.
    http://www.arn.org/blogs/index.....ruit_flies

    Testing Evolution in the Lab With Biologic Institute’s Ann Gauger – podcast with link to peer-reviewed paper
    Excerpt: Dr. Gauger experimentally tested two-step adaptive paths that should have been within easy reach for bacterial populations. Listen in and learn what Dr. Gauger was surprised to find as she discusses the implications of these experiments for Darwinian evolution. Dr. Gauger’s paper, “Reductive Evolution Can Prevent Populations from Taking Simple Adaptive Paths to High Fitness,”.
    http://intelligentdesign.podom.....4_13-07_00

    “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain – Michael Behe – December 2010
    Excerpt: In its most recent issue The Quarterly Review of Biology has published a review by myself of laboratory evolution experiments of microbes going back four decades.,,, The gist of the paper is that so far the overwhelming number of adaptive (that is, helpful) mutations seen in laboratory evolution experiments are either loss or modification of function. Of course we had already known that the great majority of mutations that have a visible effect on an organism are deleterious. Now, surprisingly, it seems that even the great majority of helpful mutations degrade the genome to a greater or lesser extent.,,, I dub it “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain.(that is a net ‘fitness gain’ within a ‘stressed’ environment i.e. remove the stress from the environment and the parent strain is always more ‘fit’)
    http://behe.uncommondescent.co.....evolution/

    Where’s the substantiating evidence for neo-Darwinism?
    https://docs.google.com/document/d/1q-PBeQELzT4pkgxB2ZOxGxwv6ynOixfzqzsFlCJ9jrw/edit

  2. OT:

    David Berlinski & Michael Denton: Primary Objections to Neo-Darwinism – podcast
    http://intelligentdesign.podom.....1_05-08_00

  3. Who wants to stake a bet on how long these numbers hold and whether or not they are accurate 10 years from now?

    I mean, come on, gorillas are even less human like than chimps and we’re supposed to believe these numbers are accurate?

    Not buyin’ it.

  4. Two things:

    1. The article suggests that this discovery will upend the primate tree of life and require some reshuffling of positions. But weren’t we being told that DNA evidence confirms prior tree of life assignments, rather than requiring changes?

    2. More importantly, the whole business of declaring how similar we are to chimpanzes or gorillas or any other creature based on DNA sequencing is intellectually incompetent. DNA is incredible and an astounding example of complex specified information in its own right. But it does not even come close to determining who we are. There is a tremendous amount of information outside of DNA that determines what part of DNA is accessed, when it is accessed, how often it is accessed, what happens to the RNA after the transcription, what happens to proteins after they are built, and on and on. As was mentioned by someone on another thread (ba77?), DNA is a “parts list.” Perhaps it is more than that, but, nevertheless, it is an instructive analogy.

    Claiming that because my DNA is similar to a chimp’s DNA I am therefore similar to a chimp is as intellectually obtuse as claiming that my house must be similar to your house because we both got our materials at the Home Depot. And I’m setting aside for a moment the fact that the % claims of similar DNA have historically overstated the numbers, because even if our DNA and chimp DNA were absolutely identical in every nucleotide it would not mean that we are identical. There is a whole overlay of controlling information that is not contained in DNA.

    You want to know the difference between a chimp and a human? Don’t gaze at a printout of nucleotides; go out and do some observations. Go visit a chimp library, or a chimp factory, or a chimp computer software lab . . . Oh, no, wait. Well, then, go read Shakespeare, or listen to Chopin, or look at some of DaVinci’s works. Sorry to upset the traditional storyline, but the chimp isn’t 99% of the way there, or 95% of the way there, or any other meaningful percent of the way there to being human. Despite all the concerted efforts to prove for the past couple of centuries that we are on some kind of continuum, the fact remains that the separation between us and other creatures is not just one of degree, it is of kind.

    Any observation of similarity in DNA simply demonstrates that the overall difference isn’t in the DNA.

  5. Agreed. I think the evidence points not to common descent, but to a common Designer!

  6. Well put Eric!

    And yet how many times has the claim been made that the mythical 99% genetic similarity number, that has been kicked around for years, proved beyond any shadow of a doubt that man evolved from apes? Never mind that the number is now known to be fictitious, and never mind that Darwinists have never actually demonstrated that their mechanism, of random variation and natural selection, can ‘randomly’ generate even a single functional protein, much less have the neo-Darwinists actually demonstrated that their mechanism can transform anything like a monkey into a human. Shoot, as referenced before, the Darwinian mechanism can’t even fix a single beneficial mutation into fruit flies after decades of trying! Darwinism is simply given a free pass by neo-Darwinists as far as rigorous proof is concerned. Moreover on many internet sites, such as PT and PZ Myers blog, many neo-Darwinists have become the feces flinging monkeys they claim we came from. A person who honestly questions the claims of Darwinism and demands real proof that what is said can be done by Darwinist actually can be done in the real world is insulted, ridiculed and treated to all sorts of deceptive tactics of rhetoric devised to camouflage the fact that there is no real evidence.

  7. Two things:

    1. Does anyone know whether a chimp/human comparison has been done actually lining up the whole of DNA? I realize this would be a challenge, but it seems a lab with high performance computers should have the compute capability to do it. What I’m driving at is that many, perhaps most, of the comparisons have been done (i) using only part of the DNA, (ii) not taking into account larger positional context.

    By (ii) I mean that if we find sequence x in one place in chimp DNA and sequence x in another place in human DNA it has historically been considered that the two sequences “match up” and are counted as being part of the similarity. While this idea makes some sense and cannot be dismissed out of hand, it is based on the old and incorrect idea that the genome is simply transcribed 1 for 1 and that the only important thing is the nucleotide sequence. We now know that not only is the sequence important, but that the positioning of the sequence within the larger DNA, the surrounding material, the 3-d structure of the molecule, proximity to certain triggering signals, etc. all influence if, how, and when the particular sequence is expressed. Thus, having an identical sequence x show up in two different contexts does not necessarily mean they are identical. It is somewhat analogous to taking War and Peace and Doctor Zhivago and arguing that because most of the words that show up in the one book also show up in the other, the books are, say, 90% identical. Like a book, DNA is not just a collection of independent sequences. The placement, order and context are important.

    Anyway, just wondering if there have been any studies that analyze the whole of chimp and human DNA as aligned, not just comparing selected sequences to see if similar sequences are to be found.

    2. There is certainly more I have to learn about the specific chimp-human comparisons, but my understanding is that there are some interesting, indeed striking, similarities in some cases, whether in specific sequences or in larger DNA structures. I think we need to be careful not to dismiss this evidence too quickly. Indeed, we should probably acknowledge that in some cases these similarities are consistent with the idea of descent with modification.

    I fully agree that the source of the modification is where ID comes into play and that the idea of mutations and natural variations turning a monkey into a man (so to speak) is preposterous. That said, some of the genetic similarities are interesting and deserve thoughful consideration. Yes, it could be that we are looking at design re-used. Yes, it could be that descent occurred, but was guided. But these are also speculations. The fact is that some similarities are there and they are interesting. Perhaps at this point that is all we can say: they are interesting.

  8. Guys, did you read the article? Most human sequences are more closely related to chimp sequences (we already knew that), some are more closely related to Gorilla sequences (we actually already knew that too, the headline is the percentage showing this pattern).

    That’s down to incomplete lineage sorting, a very well chracterised phenomenon that can make gene trees diverge from species trees, but certainly isn’t going to “upend the primate tree of life”.

  9. Eric-

    1- I have been asking and have been told that I basically have no right to ask for such a thing- that is there isn’t a complete side-by-each comparison of the two genomes

    However, and I believe bornagain77 has linked to it in the recent past,there is Genome-Wide DNA Alignment Similarity (Identity) for 40,000 Chimpanzee DNA Sequences Queried against the Human Genome is 86–89%

    2- Given that most proteins are for every day stuff- maintenance and survival- I would expect all animals to have some level of similarity

    Also having a knuckle-walker evolving into an upright biped may have the feasibilty of a computer virus evolving into an app. We just don’t know if changes to a genome can account for all the other changes that are required.

  10. Apologies, wd400. I was referring to this version of the report:

    Another surprising result is that part of the gorilla genome is at odds with the current structure of the great ape evolutionary tree.

    For example, instead of gorillas being most similar to chimps and then humans in that portion of the DNA, the branches flip to humans being most similar to gorillas and then chimps.

    http://news.nationalgeographic.....n-science/

    Yes, yes, the authors go on to assure us that this doesn’t upset the “overall view of evolution” whatever that may mean. But they do acknowledge “It means within each branch [i.e., primate branch] things can happen. We can’t just conform to a simple tree on a gene-by-gene basis.”

    As I said, interesting stuff. But all the talk of similarity, relatedness, closest relative, etc. is an interpretive gloss put on the DNA comparisons that really doesn’t mean much substantively.

  11. As I said, interesting stuff. But all the talk of similarity, relatedness, closest relative, etc. is an interpretive gloss put on the DNA comparisons that really doesn’t mean much substantively.

    Well, no, the magic number of 98.5 or 97% identity doesn’t mean much. But the DNA evidence makes the evolutionary history of these species clear and there’s nothing “interpretive” about that.

  12. wd400 you state:

    But the DNA evidence makes the evolutionary history of these species clear and there’s nothing “interpretive” about that.

    Okie Dokie wd400 you seem to have all this evolutionary relationship stuff figured out from genetic sequences and I guess you are also certain this proves that man evolved from apes by neo-Darwinian means, but I have one nagging question right off the top of my head since genetic similarity carries such weight,,, exactly where do we stick kangaroos in the line leading up to humans???

    Kangaroo genes close to humans
    Excerpt: Australia’s kangaroos are genetically similar to humans,,, “There are a few differences, we have a few more of this, a few less of that, but they are the same genes and a lot of them are in the same order,” ,,,”We thought they’d be completely scrambled, but they’re not. There is great chunks of the human genome which is sitting right there in the kangaroo genome,”
    http://www.reuters.com/article.....P020081118

  13. BA,

    Kanagaroos aren’t on the “line” leading to humans (the focus on that one narrow line in the primate tree it itself a silly mistake many people make)

    That article is talking about conservation of gene order (not gene sequence) which is turns out it strong among mammals. Still no upending of trees required.

  14. Of related note:

    Here is a professor of paleoanthropology openly admitting that genuine problems exist in the Darwinian story of human origins.,, All I can say is that he must be tenured!

    Pikaia interviews Bernard Wood – pt. 1/2 – video
    http://www.youtube.com/watch?v=4mbHt_gHKOI

    In Part 2 he is frank in admitting the problems that genetic comparisons are presenting to the ‘simple’ story of human evolution.

    Pikaia interviews Bernard Wood – pt. 2/2 – video
    http://www.youtube.com/watch?v=lXLG7MbsGIk

    Dr. Fazale Rana commented, after watching the preceding video, that it almost seemed like Dr. Wood took a page out of his ‘Who Was Adam’? book;

    Related notes:

    Hugh Ross : Who was Adam? part 1 of 11 – audio
    http://www.youtube.com/watch?v=Mo8T1_PArJY

    Icon Of Evolution – Ape To Man – The Ultimate Deception – Jonathan Wells – video
    http://vimeo.com/19080087

    Here is a paper which, though technical, shows that the modern genetic evidence we now have actually supports Adam and Eve. Moreover, the evidence it presents from the latest genetic research is completely inexplicable to neo-Darwinism, i.e. neo-Darwinism, once again, completely falls apart upon rigid scrutiny; (and although I don’t agree with the extreme 6000 year Young Earth model used as a starting presumption in the paper for deriving the graphs, the model, none-the-less, can be amended quite comfortably to a longer time period. Which I, personally, think provides a much more ‘comfortable’ fit to the overall body of evidence)

    The Non-Mythical Adam and Eve! – Refuting errors by Francis Collins and BioLogos
    http://creation.com/historical-adam-biologos

    CMI has a excellent video of the preceding paper by Dr. Carter, that makes the technical aspects of the paper much easier to understand;

    The Non Mythical Adam and Eve (Dr Robert Carter) – video
    http://www.youtube.com/watch?v=8ftwf0owpzQ

    Moreover this genetic evidence for ‘Adam and Eve’, elucidated by Dr. Carter, is corroborated by several other lines of genetic evidence:

    Human Evolution? – The Compelling Genetic Evidence For Adam and Eve
    Dr. Fazale Rana – video
    http://www.metacafe.com/watch/4284482

  15. But the DNA evidence makes the evolutionary history of these species clear and there’s nothing “interpretive” about that.

    No, the DNA does not make the evolutionary history clear. The DNA comparisons of similarities show that there are similarities. Period. That is all. Everything beyond that about an alleged evolutionary history is entirely interpretive.

    This is particularly the case in light of the following known facts (among others):

    - There is no known detail — not even the slightest inkling — of what particular changes in DNA sequences would do in the alleged ancestral organism (let’s call it a “chimp” just for simplicity’s sake).

    - It is not clear that the DNA changes would in fact make a chimp into a human. There is no sound theory for explaining how it is that the small amount of difference (if we take the Darwinist storyline at its word that there is 97+% of similarity) in the DNA can have such profound effects in the ultimate organism.

    - It is known that there is a whole other level (multiple levels, actually) of information above DNA that controls how DNA is expressed. Indeed, researchers have already demonstrated that similar genes in humans and other primates can have very different expression.

    No. Running comparative DNA tests to determine similarities will tell us only about DNA similarities. Everything beyond that is a speculative storyline.

  16. wd400, that’s the whole problem with Darwinian thinking, no matter what the genetic evidence says it will never uproot Darwin’s tree of life in your imagination. Unfortunately for you, others no so committed to a dogmatic point of view, see the genetic evidence now ‘pouring out’ very differently:

    Why Darwin was wrong about the (genetic) tree of life: – 21 January 2009
    “Roughly 50 per cent of its genes have one evolutionary history and 50 per cent another,” Syvanen says. .”We’ve just annihilated the tree of life. It’s not a tree any more, it’s a different topology entirely,” says Syvanen. “What would Darwin have made of that?”
    http://www.newscientist.com/ar.....-life.html

    I would like to point out that this, ‘annihilation’ of Darwin’s genetic tree of life, article came out on the very day that Dr. Hillis, a self-proclaimed ‘world leading expert’ on the genetic tree of life, testified before the Texas State Board Of Education that the genetic tree of life overwhelmingly confirmed gradual Darwinian evolution. One could almost argue it was ‘Intelligently Designed’ for him to exposed as a fraud on that particular day of his testimony instead of just any other day of the year.

    Here is another article, written by a leading researcher in the world mind you, that states the true pattern found for life, from comparative genetic evidence:

    A New Model for Evolution: A Rhizome – Didier Raoult – May 2010
    Excerpt: Thus we cannot currently identify a single common ancestor for the gene repertoire of any organism.,,, Overall, it is now thought that there are no two genes that have a similar history along the phylogenic tree.,,,Therefore the representation of the evolutionary pathway as a tree leading to a single common ancestor on the basis of the analysis of one or more genes provides an incorrect representation of the stability and hierarchy of evolution. Finally, genome analyses have revealed that a very high proportion of genes are likely to be newly created,,, and that some genes are only found in one organism (named ORFans). These genes do not belong to any phylogenic tree and represent new genetic creations.
    http://darwins-god.blogspot.co.....izome.html

    Since evolutionists continually misrepresent the true state of the evidence for molecular sequences, here are several more comments and articles, by leading experts, on the incongruence of molecular sequences to Darwin’s theory:
    https://docs.google.com/document/pub?id=1S5wXsukzkauD5YQLkQYuIMGL25I4fJrOUzJhONvBXe4

    As well, completely contrary to evolutionary thought, this following article and video shows that the ‘same exact genes’ in different species have actually been shown to produce ‘completely different’ body structures:

    A Primer on the Tree of Life (Part 4)
    Excerpt: “In sharks, for example, the gut develops from cells in the roof of the embryonic cavity. In lampreys, the gut develops from cells on the floor of the cavity. And in frogs, the gut develops from cells from both the roof and the floor of the embryonic cavity. This discovery—that homologous structures can be produced by different developmental pathways—contradicts what we would expect to find if all vertebrates share a common ancestor. – Explore Evolution
    http://www.evolutionnews.org/2......html#more

  17. But the DNA evidence makes the evolutionary history of these species clear and there’s nothing “interpretive” about that.

    If and only if DNA was destiny, but we know it isn’t

  18. Eric,

    I’m not talking about similarity – I’m talking about inferring the pattern of speciation that gave rise to humans, chimps and gorillas. We can use DNA sequences to reconstruct that history .

    BA,

    That’s just silly, you’re talking about studies on trying to recreate the patterns at the very base of the tree of all life. We are talking about recovering signal from the last 10 million years

    Joe,

    No. What DNA mainly is is history, and the history of these genomes is enough for us to infer quite a lot about the history of these species.

  19. So biology isn’t about science, it’s about history?

    What if no amount of genetic change can account for all the other changes required?

    So perhaps if you assume a history you can use DNA to weave your tale-

    How much of the genome is involved with development and what part is involved with daily activities? And in which does your “history” reside- developmental or daily?

  20. Biology is a science. One of the things we can do with it is infer something about the history of lineages/populations/species.

    What if no amount of genetic change can account for all the other changes required?

    Well, that would be a very bold claim which someone would need some evidence for, wouldn’t it?

    How much of the genome is involved with development and what part is involved with daily activities? And in which does your “history” reside- developmental or daily?

    Every base has a history. About 90% of the genome is junk, it’s not really possible to divide the rest of it into “development” and “day to day” sections.

  21. wd400, you state:

    That’s just silly, you’re talking about studies on trying to recreate the patterns at the very base of the tree of all life. We are talking about recovering signal from the last 10 million years.

    Really??

    The universal ancestor – Carl Woese
    Excerpt: No consistent organismal phylogeny has emerged from the many individual protein phylogenies so far produced. Phylogenetic incongruities can be seen everywhere in the universal tree, from its root to the major branchings within and among the various taxa to the makeup of the primary groupings themselves.
    http://www.pnas.org/content/95/12/6854.full

    Well wd400 seems you are either completely unaware of the the severe problems with this line of evidence or you are being deliberately misleading;

    Further note as to how much unwarranted trust you seem to placed into this ‘cherry picked’ genetic similarity evidence:

    Human/Ape Common Ancestry: Following the Evidence – Casey Luskin – June 2011
    So the researchers constructed an evolutionary tree based on 129 skull and tooth measurements for living hominoids, including gorillas, chimpanzees, orangutans and humans, and did the same with 62 measurements recorded on Old World monkeys, including baboons, mangabeys and macaques. They also drew upon published molecular phylogenies. At the outset, Wood and Collard assumed the molecular evidence was correct. “There were so many different lines of genetic evidence pointing in one direction,” Collard explains. But no matter how the computer analysis was run, the molecular and morphological trees could not be made to match15 (see figure, below). Collard says this casts grave doubt on the reliability of using morphological evidence to determine the fine details of evolutionary trees for higher primates. “It is saying it is positively misleading,” he says. The abstract of the pair’s paper stated provocatively that “existing phylogenetic hypotheses about human evolution are unlikely to be reliable”.[10]
    http://www.evolutionnews.org/2.....nt-9266481

    And regardless of what you believe, the truth is that the similarity between chimps and humans is far larger than what you imagine it to be:

    Human/Ape Common Ancestry: Following the Evidence – Casey Luskin – June 2011
    Excerpt: To compare the two [human and chimpanzee] genomes, the first thing we must do is to line up the parts of each genome that are similar. When we do this alignment, we discover that only 2400 million of the human genome’s 3164.7 million ‘letters’ align with the chimpanzee genome – that is, 76% of the human genome. Some scientists have argued that the 24% of the human genome that does not line up with the chimpanzee genome is useless “junk DNA”. However, it now seems that this DNA could contain over 600 protein-coding genes, and also code for functional RNA molecules.
    Looking closely at the chimpanzee-like 76% of the human genome, we find that to make an exact alignment, we often have to introduce artificial gaps in either the human or the chimp genome. These gaps give another 3% difference. So now we have a 73% similarity between the two genomes.
    In the neatly aligned sequences we now find another form of difference, where a single ‘letter’ is different between the human and chimp genomes. These provide another 1.23% difference between the two genomes. Thus, the percentage difference is now at around 72%.
    We also find places where two pieces of human genome align with only one piece of chimp genome, or two pieces of chimp genome align with one piece of human genome. This “copy number variation” causes another 2.7% difference between the two species. Therefore the total similarity of the genomes could be below 70%.
    http://www.evolutionnews.org/2.....47161.html

    Moreover as has been repeatedly pointed out to you wd400, this similarity, even if it weren’t as screwed up as it is, still does nothing to scientifically prove that the similarity is arrived at by ‘random’ neo-Darwinian processes.,, But that would require you to actually get ‘scientific’ instead of just telling stories. Joe can school you on that!

  22. wd400 you state:

    About 90% of the genome is junk,

    Oh yeah no dogmatism here!,,, Care to show us the studies in which 90% of the genome has been removed with no ill effect???

  23. This is getting a bit silly. Woesse is specifically talking finding the root of tree of life. And gene-tree species-tree incongruence doesn’t meant we can’t find a species tree – the gorilla genome being an example of exactly that!

    I said to start with that “magic number” of nucleotide identity is meaningless (Casey Lusking doesn’t seem to get this, so is on some sort of mad scramble to find a lower magic number, so far as I can tell). But I’ve not been talking about similarity at any stage in this conversation so why you are I can’t imagine.

    And no, there is no dogmatism in saying that ~90% of the genome is junk. That’s a pretty average estimate. Add up the viruses, broken transposons, psuedogenes and non-conserved intergenic space and that’s about what you’ll get. There is also the genetic load argument which makes it clear most of the genome can’t be essential. If you evidence that much more than 10% of the genome is useful I’ll happily bump my estimate up to suit.

  24. wd400, you say that 90% of the genome is useless junk. OK PROVE IT!!! Show the studies in which 90% of the genome has been removed. Tell you what I’ll save you the trouble:

    Jonathan Wells on Darwinism, Science, and Junk DNA – November 2011
    Excerpt: Mice without “junk” DNA. In 2004, Edward Rubin?] and a team of scientists at Lawrence Berkeley Laboratory in California reported that they had engineered mice missing over a million base pairs of non-protein-coding (“junk”) DNA—about 1% of the mouse genome—and that they could “see no effect in them.”
    But molecular biologist Barbara Knowles (who reported the same month that other regions of non-protein-coding mouse DNA were functional) cautioned that the Lawrence Berkeley study didn’t prove that non-protein-coding DNA has no function. “Those mice were alive, that’s what we know about them,” she said. “We don’t know if they have abnormalities that we don’t test for.”And University of California biomolecular engineer David Haussler? said that the deleted non-protein-coding DNA could have effects that the study missed. “Survival in the laboratory for a generation or two is not the same as successful competition in the wild for millions of years,” he argued.
    In 2010, Rubin was part of another team of scientists that engineered mice missing a 58,000-base stretch of so-called “junk” DNA. The team found that the DNA-deficient mice appeared normal until they (along with a control group of normal mice) were fed a high-fat, high-cholesterol diet for 20 weeks. By the end of the study, a substantially higher proportion of the DNA-deficient mice had died from heart disease. Clearly, removing so-called “junk” DNA can have effects that appear only later or under other circumstances.
    http://www.uncommondescent.com.....-junk-dna/

    Hmm wd400, once again you are either completely unaware of the facts or are being severely misleading, my bet is on the later!!!

    Notes:

    Astonishing DNA complexity update
    Excerpt: The untranslated regions (now called UTRs, rather than ‘junk’) are far more important than the translated regions (the genes), as measured by the number of DNA bases appearing in RNA transcripts. Genic regions are transcribed on average in five different overlapping and interleaved ways, while UTRs are transcribed on average in seven different overlapping and interleaved ways. Since there are about 33 times as many bases in UTRs than in genic regions, that makes the ‘junk’ about 50 times more active than the genes.
    http://creation.com/astonishin.....ity-update

    Reference Notes For Jonathan Wells’ Book – The Myth Of Junk DNA – Hundreds of Studies Outlining Function for ‘Junk’ DNA
    http://docs.google.com/viewer?.....xHdM_e731g

    Refutation Of Endogenous Retrovirus – ERVs – Richard Sternberg, PhD Evolutionary Biology – video
    http://www.metacafe.com/watch/4094119

    Endogenous retroviruses regulate periimplantation placental growth and differentiation
    http://www.pnas.org/content/103/39/14390.abstract

    Pseudogenes are key regulators in health and disease, not junk – April 2011
    Excerpt: Far from being silent relics, many pseudogenes are transcribed into RNA, some exhibiting a tissue-specific pattern of activation. Pseudogene transcripts can be processed into short interfering RNAs that regulate coding genes through the RNAi pathway. In another remarkable discovery, it has been shown that pseudogenes are capable of regulating tumor suppressors and oncogenes by acting as microRNA decoys.
    http://www.uncommondescent.com.....-not-junk/

    Functional Pseudogenes Are Everywhere! – Fazale Rana – June 2011
    http://www.reasons.org/functio.....everywhere

    etc.. etc.. etc..

    But hey wd400, let’s cut to the chase and why don’t you actually provide substantiating evidence for neo-Darwinism instead of playing stupid games?

  25. BA,

    If you keep reading “news” from one source you are always going to get a slanted view about reality. Of course there are a few cases in which pseudogenes, viruses and transposable elements have been repurposed into something helpful – but that doesn’t explain why there are millions of copies of them which aren’t modified into other roles.

    And I’m not playing stupid games, I’m supporting one very small point – the result that ~15% of genes in the human genome are more closely related to gorilla genes than chimp genes doesn’t undercut the fact humans and chimps share a recent common ancestor (more recent, in fact, than the human-chimp-gorilla ancestor)

  26. wd400, I think more than enough evidence has been presented severely undermining your claim to ’90%’ junk DNA, indeed undermining your very credibility to being forthright and honest with the evidence in the first place!,,, whether you agree or not I really don’t care! But to move on, you now claim, as a ‘fact’, that ‘humans and chimps share a recent common ancestor’,,, all from supposed genetic similarity evidence which you have not established to any compelling degree, Yet I have already listed, in post #1, studies that have severely undercut the entire similarity line of reasoning. But what the hey it’s all you got to work with so I guess your going to keep repeating the same inconsequential stuff hoping that anything sticks. But let’s get down to some nitty gritty experimental evidence and let’s see what the all mighty power of neo-Darwinism can do when put to the test shall we wd4000? I mean you really want to show us IDiots what neo-Darwinism can do don’t you??? So let’s look at actual empirics!!!

    Where’s the substantiating evidence for neo-Darwinism?

    Many of these researchers also raise the question (among others), why — even after inducing literally billions of induced mutations and (further) chromosome rearrangements — all the important mutation breeding programs have come to an end in the Western World instead of eliciting a revolution in plant breeding, either by successive rounds of selective “micromutations” (cumulative selection in the sense of the modern synthesis), or by “larger mutations” … and why the law of recurrent variation is endlessly corroborated by the almost infinite repetition of the spectra of mutant phenotypes in each and any new extensive mutagenesis experiment (as predicted) instead of regularly producing a range of new systematic species…
    (Wolf-Ekkehard Lönnig, “Mutagenesis in Physalis pubescens L. ssp. floridana: Some Further Research on Dollo’s Law and the Law of Recurrent Variation,” Floriculture and Ornamental Biotechnology Vol. 4 (Special Issue 1): 1-21 (December 2010).)

    Four decades worth of lab work is surveyed here:

    “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain – Michael Behe – December 2010
    Excerpt: In its most recent issue The Quarterly Review of Biology has published a review by myself of laboratory evolution experiments of microbes going back four decades.,,, The gist of the paper is that so far the overwhelming number of adaptive (that is, helpful) mutations seen in laboratory evolution experiments are either loss or modification of function. Of course we had already known that the great majority of mutations that have a visible effect on an organism are deleterious. Now, surprisingly, it seems that even the great majority of helpful mutations degrade the genome to a greater or lesser extent.,,, I dub it “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain.
    http://behe.uncommondescent.co.....evolution/

    Michael Behe talks about the preceding paper in this following podcast:

    Michael Behe: Challenging Darwin, One Peer-Reviewed Paper at a Time – December 2010
    http://intelligentdesign.podom.....3_46-08_00

    How about the oft cited example for neo-Darwinism of antibiotic resistance?

    List Of Degraded Molecular Abilities Of Antibiotic Resistant Bacteria:
    Excerpt: Resistance to antibiotics and other antimicrobials is often claimed to be a clear demonstration of “evolution in a Petri dish.” ,,, all known examples of antibiotic resistance via mutation are inconsistent with the genetic requirements of evolution. These mutations result in the loss of pre-existing cellular systems/activities, such as porins and other transport systems, regulatory systems, enzyme activity, and protein binding.
    http://www.trueorigin.org/bacteria01.asp

    That doesn’t seem to be helping! How about we look really, really, close at very sensitive growth rates and see if we can catch almighty evolution in action???

    Unexpectedly small effects of mutations in bacteria bring new perspectives – November 2010
    Excerpt: Most mutations in the genes of the Salmonella bacterium have a surprisingly small negative impact on bacterial fitness. And this is the case regardless whether they lead to changes in the bacterial proteins or not.,,, using extremely sensitive growth measurements, doctoral candidate Peter Lind showed that most mutations reduced the rate of growth of bacteria by only 0.500 percent. No mutations completely disabled the function of the proteins, and very few had no impact at all. Even more surprising was the fact that mutations that do not change the protein sequence had negative effects similar to those of mutations that led to substitution of amino acids. A possible explanation is that most mutations may have their negative effect by altering mRNA structure, not proteins, as is commonly assumed.
    http://www.physorg.com/news/20.....teria.html

    Shoot that doesn’t seem to be helping either! Perhaps we just got to give the almighty power of neo-Darwinism ‘room to breathe’? How about we ‘open the floodgates’ to the almighty power of Darwinian Evolution and look at Lenski’s Long Term Evolution Experiment and see what we can find after 50,000 generations, which is equivalent to somewhere around 1,000,000 years of human evolution???

    Richard Lenski’s Long-Term Evolution Experiments with E. coli and the Origin of New Biological Information – September 2011
    Excerpt: The results of future work aside, so far, during the course of the longest, most open-ended, and most extensive laboratory investigation of bacterial evolution, a number of adaptive mutations have been identified that endow the bacterial strain with greater fitness compared to that of the ancestral strain in the particular growth medium. The goal of Lenski’s research was not to analyze adaptive mutations in terms of gain or loss of function, as is the focus here, but rather to address other longstanding evolutionary questions. Nonetheless, all of the mutations identified to date can readily be classified as either modification-of-function or loss-of-FCT.
    (Michael J. Behe, “Experimental Evolution, Loss-of-Function Mutations and ‘The First Rule of Adaptive Evolution’,” Quarterly Review of Biology, Vol. 85(4) (December, 2010).)
    http://www.evolutionnews.org/2.....51051.html

    Now that just can’t be right!! Man we should really start to be seeing some neo-Darwinian fireworks by 50,000 generations!?! Hey I know what we can do! How about we see what happened when the ‘top five’ mutations from Lenski’s experiment were combined??? Surely now the Darwinian magic will start flowing!!!

    Mutations : when benefits level off – June 2011 – (Lenski’s e-coli after 50,000 generations)
    Excerpt: After having identified the first five beneficial mutations combined successively and spontaneously in the bacterial population, the scientists generated, from the ancestral bacterial strain, 32 mutant strains exhibiting all of the possible combinations of each of these five mutations. They then noted that the benefit linked to the simultaneous presence of five mutations was less than the sum of the individual benefits conferred by each mutation individually.
    http://www2.cnrs.fr/en/1867.htm?theme1=7

    Now something is going terribly wrong here!!! Tell you what, let’s just forget trying to observe evolution in the lab, I mean it really is kind of cramped in the lab you know, and now let’s REALLY open the floodgates and let’s see what the almighty power of neo-Darwinian evolution can do with the ENTIRE WORLD at its disposal??? Surely now almighty neo-Darwinian evolution will flex its awesomely powerful muscles and forever make those IDiots, who believe in Intelligent Design, cower in terror!!!

    A review of The Edge of Evolution: The Search for the Limits of Darwinism
    The numbers of Plasmodium and HIV in the last 50 years greatly exceeds the total number of mammals since their supposed evolutionary origin (several hundred million years ago), yet little has been achieved by evolution. This suggests that mammals could have “invented” little in their time frame. Behe: ‘Our experience with HIV gives good reason to think that Darwinism doesn’t do much—even with billions of years and all the cells in that world at its disposal’ (p. 155).
    http://creation.com/review-mic.....-evolution

    Michael Behe, The Edge of Evolution, pg. 162 Swine Flu, Viruses, and the Edge of Evolution
    “Indeed, the work on malaria and AIDS demonstrates that after all possible unintelligent processes in the cell–both ones we’ve discovered so far and ones we haven’t–at best extremely limited benefit, since no such process was able to do much of anything. It’s critical to notice that no artificial limitations were placed on the kinds of mutations or processes the microorganisms could undergo in nature. Nothing–neither point mutation, deletion, insertion, gene duplication, transposition, genome duplication, self-organization nor any other process yet undiscovered–was of much use.”
    http://www.evolutionnews.org/2.....20071.html

    Now, there is something terribly wrong here! After looking high and low and everywhere in between, we can’t seem to find the almighty power of neo-Darwinism anywhere!! Shoot we can’t even find ANY power of neo-Darwinism whatsoever!!! It is as if the whole neo-Darwinian theory, relentlessly sold to the general public as it was the gospel truth, is nothing but a big fat lie!!!

    ====

    A. L. Hughes’s New Non-Darwinian Mechanism of Adaption Was Discovered and Published in Detail by an ID Geneticist 25 Years Ago – Wolf-Ekkehard Lönnig – December 2011
    Excerpt: The original species had a greater genetic potential to adapt to all possible environments. In the course of time this broad capacity for adaptation has been steadily reduced in the respective habitats by the accumulation of slightly deleterious alleles (as well as total losses of genetic functions redundant for a habitat), with the exception, of course, of that part which was necessary for coping with a species’ particular environment….By mutative reduction of the genetic potential, modifications became “heritable”. — As strange as it may at first sound, however, this has nothing to do with the inheritance of acquired characteristics. For the characteristics were not acquired evolutionarily, but existed from the very beginning due to the greater adaptability. In many species only the genetic functions necessary for coping with the corresponding environment have been preserved from this adaptability potential. The “remainder” has been lost by mutations (accumulation of slightly disadvantageous alleles) — in the formation of secondary species.

  27. As I’ve said repeatedly, similarity is a red herring. We can use pop. gen. to infer species trees from gene trees even when they are (as expected) incongruous.

    As to the rest of the Gish Gallop, I’m not engaging in any of that because (a) it’s not what I’m talking about (b) it’s evident you don’t understand much of it (c) that many exclamation marks is really not created the impression of someone who is doing any thinking between the typing and the linking.

  28. Wow, lots of comments, which I haven’t fully waded through, but this last one #27 caught my eye.

    “We can use pop. gen. to infer species trees from gene trees even when they are (as expected) incongruous.”

    Good, so now we acknowledge that we are “inferring.” Just earlier today we were told that this was all very clear from the DNA itself and that there was nothing “interpretive” about it. This is good. We’re making progress.

    I have to laugh, though, at the idea that we should expect species trees and gene trees to be incongruous. Go back and read the literature from 10 years ago. That was absolutely not the storyline then. No, genetics was supposed to be the great confirmer of the traditional tree of life and there are still lots of folks clinging to that storyline even today. So, no, you don’t get to now do a 180 degree turn and claim that incongruity is evidence for the evolutionary narrative because that is what was “expected.” Hogwash. It was absolutely not expected or predicted by evolutionary theory.

    If it is expected now, it is only because we have more experience and now realize that things are in fact quite different from what evolutionary theory was misleading us to expect.

  29. Eric, the effect of incomplete lineage sorting has been known for a very long time (certainly longer than 10 years), and it is not a problem that prohibits the reconstruction of the history of the human/chimp/gorilla lineages. The fact that we observe more or less exactly the amount of incongruence that is expected in an evolutionar scenario further strengthens the theory.
    Maybe you could have a look at this article from BioLogos? What are your thoughts on this?

  30. Go back and read the literature from 10 years ago. That was absolutely not the storyline then

    why don’t we go back 25 years, to when Incomplete lineage sorting was a “well known” problem. Moreoever, the point is that based on what we know about population genetics you expect to see unsorted lineages quite a long time after speciation (or, indeed, after more ancient but rapid bursts of speciation).

  31. wd400, after my post in #26, laying out the fact that you have no empirical evidence, you state;

    As to the rest of the Gish Gallop, I’m not engaging in any of that because (a) it’s not what I’m talking about (b) it’s evident you don’t understand much of it (c) that many exclamation marks is really not created the impression of someone who is doing any thinking between the typing and the linking.

    Well no wd400, contrary to what you say, (a) it has everything to do with what you and every other neo-Darwinists claims can happen (b) The evidence I presented doesn’t need to be ‘understood’ by some elite neo-Darwinists like you but it needs to be countermanded with some extraordinary proof, (c) you do not respond to any of it, not because you think ill of my ‘thinking’, but because you have ZERO empirical evidence to offer in response to the crushing evidence.

    And that is the whole point wd400! You are a religious materialistic dogmatist trying to highjack science without ever paying the price that science requires for proof. Namely providing actual empirical evidence to justify your outlandish claims!!!

  32. Where did I say I was a neo-darwinist?

  33. wd400 you ask;

    Where did I say I was a neo-darwinist?

    What you are not a neo-Darwinist? Well what exactly do you believe? Do you believe that purely material processes can generate transcendent information? If not why in blue blazes are you defending your position? Please do elaborate your beliefs.

    notes:

    “Nonphysical formalism (prescriptive information) not only describes, but preceded physicality and the Big Bang
    Formalism prescribed, organized and continues to govern physicodynamics.”
    http://www.mdpi.com/2075-1729/2/1/106/ag

    The Law of Physicodynamic Insufficiency – Dr David L. Abel – November 2010
    Excerpt: “If decision-node programming selections are made randomly or by law rather than with purposeful intent, no non-trivial (sophisticated) function will spontaneously arise.”,,, After ten years of continual republication of the null hypothesis with appeals for falsification, no falsification has been provided. The time has come to extend this null hypothesis into a formal scientific prediction: “No non trivial algorithmic/computational utility will ever arise from chance and/or necessity alone.”
    http://www-qa.scitopics.com/Th.....iency.html

    The Law of Physicodynamic Incompleteness – David L. Abel – August 2011
    Summary: “The Law of Physicodynamic Incompleteness” states that inanimate physicodynamics is completely inadequate to generate, or even explain, the mathematical nature of physical interactions (the purely formal laws of physics and chemistry). The Law further states that physicodynamic factors cannot cause formal processes and procedures leading to sophisticated function. Chance and necessity alone cannot steer, program or optimize algorithmic/computational success to provide desired non-trivial utility.
    http://www.scitopics.com/The_L.....eness.html

    Falsification Of Neo-Darwinism by (Transcendent) Quantum Entanglement/Information
    https://docs.google.com/document/d/1p8AQgqFqiRQwyaF8t1_CKTPQ9duN8FHU9-pV4oBDOVs/edit?hl=en_US

  34. Well, in this thread all I’ve said is that humans and chimps share a common ancestor, as to humans, chimps and gorillas. And the junk DNA stuff, which I probably shouldn’t have been drawn into.

    “Transcended information” sounds quite a lot like quantum mysticism, as does the text in your “notes”. So I’m not sure I believe it exists, let alone know where it comes from.

    And no, I wouldn’t describe myself as a neo-darwinist

  35. What if no amount of genetic change can account for all the other changes required?

    Well, that would be a very bold claim which someone would need some evidence for, wouldn’t it?

    Actually the people saying that changes to the genome can account for all the other changes are making the unsupportable bold claim.

    IOW you have it all backwards.

  36. So wd400, if you are not even sure ‘transcendent information’ exists (even though you just wrote a paragraph of transcendent information) then that would safely put you in the neo-Darwinian camp now wouldn’t it?!?

  37. as well wd400 you say ‘quantum mysticism’ as if quantum mechanics is some kind of weird pseudo-science like neo-Darwinism is. Yet far from a ‘mystical’ pseudo-science, quantum mechanics has far more predictive power than any other foundational description of reality to date (especially exceeding the predictive power of General Relativity). In fact the foundation of quantum mechanics within science is so solid that researchers were able to bring forth this following proof;

    An experimental test of all theories with predictive power beyond quantum theory – May 2011
    Excerpt: Hence, we can immediately refute any already considered or yet-to-be-proposed alternative
    model with more predictive power than this. (Quantum Theory)
    http://arxiv.org/pdf/1105.0133.pdf

    Now wd400 this is completely unheard of in science as far as I know. i.e. That a mathematical description of reality would advance to the point that one can actually perform a experiment showing that your current theory will not be exceeded in predictive power by another theory is simply unprecedented in science!

    Moreover as to establishing the ‘non-mystical’ reality of quantum mechanics:

    It is important to note that the following experiment actually encoded information into a photon while it was in its quantum wave state, thus destroying the notion, held by many, that the wave function was not ‘physically real’ but was merely ‘abstract’. i.e. How can information possibly be encoded into something that is not physically real but merely abstract?

    Ultra-Dense Optical Storage – on One Photon
    Excerpt: Researchers at the University of Rochester have made an optics breakthrough that allows them to encode an entire image’s worth of data into a photon, slow the image down for storage, and then retrieve the image intact.,,, As a wave, it passed through all parts of the stencil at once,,,
    http://www.physorg.com/news88439430.html

    The following paper mathematically corroborated the preceding experiment and cleaned up some pretty nasty probabilistic incongruities that arose from a purely statistical interpretation, i.e. it seems that stacking a ‘random infinity’, (parallel universes to explain quantum wave collapse), on top of another ‘random infinity’, to explain quantum entanglement, leads to irreconcilable mathematical absurdities within quantum mechanics:

    Quantum Theory’s ‘Wavefunction’ Found to Be Real Physical Entity: Scientific American – November 2011
    Excerpt: David Wallace, a philosopher of physics at the University of Oxford, UK, says that the theorem is the most important result in the foundations of quantum mechanics that he has seen in his 15-year professional career. “This strips away obscurity and shows you can’t have an interpretation of a quantum state as probabilistic,” he says.
    http://www.scientificamerican......vefunction

    The quantum (wave) state cannot be interpreted statistically – November 2011
    http://lanl.arxiv.org/abs/1111.3328

    as well, as long as we are on the subject of quantum mechanics:

    “I’m going to talk about the Bell inequality, and more importantly a new inequality that you might not have heard of called the Leggett inequality, that was recently measured. It was actually formulated almost 30 years ago by Professor Leggett, who is a Nobel Prize winner, but it wasn’t tested until about a year and a half ago (in 2007), when an article appeared in Nature, that the measurement was made by this prominent quantum group in Vienna led by Anton Zeilinger, which they measured the Leggett inequality, which actually goes a step deeper than the Bell inequality and rules out any possible interpretation other than consciousness creates reality when the measurement is made.” – Bernard Haisch, Ph.D., Calphysics Institute, is an astrophysicist and author of over 130 scientific publications.

    Preceding quote taken from this following video;

    Quantum Mechanics and Consciousness – A New Measurement – Bernard Haisch, Ph.D (Shortened version of entire video with notes in description of video)
    http://vimeo.com/37517080

    Moreover, the argument for God from consciousness can be framed like this:

    1. Consciousness either preceded all of material reality or is a ‘epi-phenomena’ of material reality.
    2. If consciousness is a ‘epi-phenomena’ of material reality then consciousness will be found to have no special position within material reality. Whereas conversely, if consciousness precedes material reality then consciousness will be found to have a special position within material reality.
    3. Consciousness is found to have a special, even central, position within material reality.
    4. Therefore, consciousness is found to precede material reality.
    https://docs.google.com/document/d/1kpDwWetu66fBRlPM7zjA5BpHzcu5wBY7AdB7gOz51OQ/edit

    Music and verse:

    Storyside B – Be Still
    http://www.youtube.com/watch?v=RxwhjPF28NM

    Psalm 46:10
    He says, “Be still, and know that I am God;

  38. Actually the people saying that changes to the genome can account for all the other changes are making the unsupportable bold claim.

    The difference between humans/gorillas/chimps seem to be of an acceptable order for evolutionary processes.

  39. @ Indium,

    Your link isn’t working for some reson. At least not for me. :(

  40. Sonfaro, I am sorry!

    Next try: Link

    This seems to work in the preview at least.

  41. Genetic Entropy – Dr. John Sanford – Evolution vs. Reality – video
    http://vimeo.com/35088933

  42. Indium,

    That paper came out in 1999/ 2000, well before the chimp genome was published- meaning well before we could get a handle on the real % of genetic variance.

    What happens if that difference reaches 10%, or more?

    Also there still needs to be a connection from the genetic changes to the anatomical and physiological changes.

  43. Darwinists need to realize that the genetic “evidence” is only as good as how far you’re willing to interpret & extrapolate. So what if humans have genetic similarity to chimps & apes? On what grounds do you draw arrows to connect them? And what about the layers upon layers of “epigenetic” information that control which genes to express, when and where, and how often, let alone what happens to a protein and where it would go. Exaggerating percentages of similarity between humans and primates proves nothing (except for the speculative swordmanship of Darwinists).

  44. Joe, yes 10% difference would need a different explation. But that is not observed.

  45. Indium, thanks for the link to the paper. I don’t believe the paper says what you may think it says about what we have been discussing, namely demonstrating an evolutionary history.

    For one thing, the authors assume that humans and chimps are related and then use that assumption to calculate the rate of mutation. In other words, the cause-effect chain is precisely backwards of what we are discussing here.

    Second, they looked at pseudogenes, because pseudogenes, in the Darwinian storyline, are thought to be functionless. Yet we now know that many pseudogenes do indeed have function.

    Finally, even with all that they acknowledge that:

    This high rate is difficult to reconcile with multiplicative fitness effects of individual mutations and suggests that synergistic epistasis among harmful mutations may be common.

    In other words, the mutation rates only make sense if they further assume that “each additional mutation leads to a larger decrease in relative fitness,” which they later acknowledge isn’t water tight, but politely offer that “the results presented here indicate that some form of positive epistasis among deleterious mutations is likely.”

    So unfortunately I can’t be too excited about this paper offering much in the way of evidence of an evolutionary relationship or history. There are lots of other papers in the same category.

    —–

    That said, as I said above, these are interesting questions and there is some interesting data that deserves attention, including by critics of traditional evolutionary theory. ID does not object to common descent and some ID proponents feel that there is decent evidence for an ape-to-human scenario. Others are much more skeptical of the evidence.

    Personally, I don’t have a philosophical or theological stake in either outcome so I am purely interested from a scientific standpoint (just like most ID proponents) and am open to being convinced if the evidence is there. I’m not convinced yet, partly because so often when I look at the evidence people put forth (like the paper you cited), on closer inspection it either doesn’t address the issue directly or simply assumes it away.

    Thus all I can confidently say for now, as I said above, is it is interesting.

  46. Joe, yes 10% difference would need a different explation. But that is not observed.

    How do you know?

    Read the article I linked to in comment 9-

    I know it is a creation website but if they are right then some evo will have to step up and either try to refute it or explain it (away).

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